Variant report

Variant	rs9990448
Chromosome Location	chr4:19739116-19739117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10005765	1.00[AMR][1000 genomes]
rs10008379	1.00[AMR][1000 genomes]
rs10010443	1.00[AMR][1000 genomes]
rs10011381	1.00[AMR][1000 genomes]
rs13435204	1.00[AMR][1000 genomes]
rs13435258	1.00[AMR][1000 genomes]
rs13435540	1.00[AMR][1000 genomes]
rs28366585	1.00[AMR][1000 genomes]
rs28367213	1.00[AMR][1000 genomes]
rs28379617	1.00[AMR][1000 genomes]
rs28403368	1.00[AMR][1000 genomes]
rs28541621	1.00[AMR][1000 genomes]
rs28575200	1.00[AMR][1000 genomes]
rs28580670	1.00[AMR][1000 genomes]
rs28632013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28645547	1.00[AMR][1000 genomes]
rs28676742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28693679	1.00[AMR][1000 genomes]
rs56835149	1.00[AMR][1000 genomes]
rs73803159	1.00[AMR][1000 genomes]
rs9985643	1.00[AMR][1000 genomes]
rs9999794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3467023	chr4:19734943-19739840	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3467024	chr4:19734943-19739840	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19737000-19740600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:19737200-19740600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:19737400-19749600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:19738600-19740400	Weak transcription	Osteobl	bone
5	chr4:19738600-19740600	Enhancers	Hela-S3	cervix
6	chr4:19738800-19739400	Enhancers	Fetal Kidney	kidney
7	chr4:19738800-19739600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:19739000-19739200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:19739000-19739600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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