Variant report

Variant	rs10010443
Chromosome Location	chr4:19826575-19826576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10005765	1.00[AMR][1000 genomes]
rs10008379	1.00[AMR][1000 genomes]
rs10011381	1.00[AMR][1000 genomes]
rs13435204	1.00[AMR][1000 genomes]
rs13435258	1.00[AMR][1000 genomes]
rs13435540	1.00[AMR][1000 genomes]
rs28366585	1.00[AMR][1000 genomes]
rs28367213	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379617	1.00[AMR][1000 genomes]
rs28403368	1.00[AMR][1000 genomes]
rs28541621	1.00[AMR][1000 genomes]
rs28575200	1.00[AMR][1000 genomes]
rs28632013	1.00[AMR][1000 genomes]
rs28645547	1.00[AMR][1000 genomes]
rs28676742	1.00[AMR][1000 genomes]
rs28693679	1.00[AMR][1000 genomes]
rs56835149	1.00[AMR][1000 genomes]
rs73803159	1.00[AMR][1000 genomes]
rs9985643	1.00[AMR][1000 genomes]
rs9990448	1.00[AMR][1000 genomes]
rs9999794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1009938	chr4:19787648-19848997	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1001635	chr4:19787648-19854388	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878735	chr4:19810878-19933069	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19811400-19829200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:19825800-19827600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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