Variant report
| Variant | rs73803159 |
|---|---|
| Chromosome Location | chr4:19758393-19758394 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr4:19758346-19758512 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | CEBPB | chr4:19758379-19758600 | A549 | lung: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 3 | CEBPB | chr4:19758300-19758642 | IMR90 | lung: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 4 | CEBPB | chr4:19758262-19758879 | Hela-S3 | cervix: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 5 | CEBPB | chr4:19758302-19758602 | ECC-1 | luminal epithelium: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 6 | CEBPB | chr4:19758310-19758636 | HepG2 | liver: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 7 | EP300 | chr4:19758349-19758695 | Hela-S3 | cervix: | n/a | n/a |
| 8 | STAT3 | chr4:19758368-19758558 | MCF10A-Er-Src | breast: | n/a | n/a |
| 9 | STAT3 | chr4:19758353-19758635 | MCF10A-Er-Src | breast: | n/a | n/a |
| 10 | CEBPB | chr4:19758217-19758749 | ECC-1 | luminal epithelium: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| 11 | TCF7L2 | chr4:19758371-19758651 | Hela-S3 | cervix: | n/a | n/a |
| 12 | STAT3 | chr4:19758367-19758629 | MCF10A-Er-Src | breast: | n/a | n/a |
| 13 | CEBPB | chr4:19758303-19758599 | H1-hESC | embryonic stem cell: | n/a | chr4:19758461-19758472 chr4:19758479-19758490 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249441 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10005765 | 1.00[AMR][1000 genomes] |
| rs10008379 | 1.00[AMR][1000 genomes] |
| rs10010443 | 1.00[AMR][1000 genomes] |
| rs10011381 | 1.00[AMR][1000 genomes] |
| rs13435204 | 1.00[AMR][1000 genomes] |
| rs13435258 | 1.00[AMR][1000 genomes] |
| rs13435540 | 1.00[AMR][1000 genomes] |
| rs28366585 | 1.00[AMR][1000 genomes] |
| rs28367213 | 1.00[AMR][1000 genomes] |
| rs28379617 | 1.00[AMR][1000 genomes] |
| rs28403368 | 1.00[AMR][1000 genomes] |
| rs28541621 | 1.00[AMR][1000 genomes] |
| rs28575200 | 1.00[AMR][1000 genomes] |
| rs28580670 | 1.00[AMR][1000 genomes] |
| rs28632013 | 1.00[AMR][1000 genomes] |
| rs28645547 | 1.00[AMR][1000 genomes] |
| rs28676742 | 1.00[AMR][1000 genomes] |
| rs28693679 | 1.00[AMR][1000 genomes] |
| rs56835149 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9985643 | 1.00[AMR][1000 genomes] |
| rs9990448 | 1.00[AMR][1000 genomes] |
| rs9999794 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv829874 | chr4:19635213-19781102 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19758200-19759000 | Enhancers | Hela-S3 | cervix |
