Variant report

Variant	rs12331756
Chromosome Location	chr4:142921368-142921369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10006332	1.00[AMR][1000 genomes]
rs10019498	1.00[AMR][1000 genomes]
rs10020982	1.00[AMR][1000 genomes]
rs10023428	1.00[AMR][1000 genomes]
rs11100742	1.00[AMR][1000 genomes]
rs11944370	1.00[AMR][1000 genomes]
rs12331811	1.00[AMR][1000 genomes]
rs28401451	1.00[AMR][1000 genomes]
rs28401585	1.00[AMR][1000 genomes]
rs28495283	1.00[AMR][1000 genomes]
rs28508450	1.00[AMR][1000 genomes]
rs28523591	1.00[AMR][1000 genomes]
rs28594354	1.00[AMR][1000 genomes]
rs28642981	1.00[AMR][1000 genomes]
rs28654375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688221	1.00[AMR][1000 genomes]
rs28851623	1.00[AMR][1000 genomes]
rs9998759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3489411	chr4:142865824-142926421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3489412	chr4:142865824-142926421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830096	chr4:142867099-143023761	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3378753	chr4:142886396-142940399	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142921000-142922000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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