Variant report

Variant	rs28654375
Chromosome Location	chr4:142835794-142835795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10019498	1.00[AMR][1000 genomes]
rs11100742	1.00[AMR][1000 genomes]
rs11934160	1.00[AMR][1000 genomes]
rs11944370	1.00[AMR][1000 genomes]
rs12331756	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331811	1.00[AMR][1000 genomes]
rs28401451	1.00[AMR][1000 genomes]
rs28508450	1.00[AMR][1000 genomes]
rs28523591	1.00[AMR][1000 genomes]
rs28642981	1.00[AMR][1000 genomes]
rs28688221	1.00[AMR][1000 genomes]
rs28851623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142833000-142835800	Enhancers	Primary hematopoietic stem cells	blood
2	chr4:142833000-142836000	Enhancers	K562	blood
3	chr4:142834800-142836000	Weak transcription	HUVEC	blood vessel
4	chr4:142835400-142836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:142835400-142840800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links