Variant report

Variant	rs12331871
Chromosome Location	chr4:77023499-77023500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77014220..77016956-chr4:77022006..77024608,2	K562	blood:
2	chr4:77022675..77026827-chr4:77067488..77070849,4	K562	blood:

Variant related genes	Relation type
ENSG00000265931	Chromatin interaction
ENSG00000138750	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10014749	0.89[EUR][1000 genomes]
rs10015467	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10028141	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11097230	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11944608	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13115827	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13131187	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13152491	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17001385	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001391	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs17001392	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs2197104	0.90[EUR][1000 genomes]
rs28600676	0.91[EUR][1000 genomes]
rs28611472	0.89[EUR][1000 genomes]
rs28628345	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28635901	0.91[EUR][1000 genomes]
rs28649343	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28726273	0.89[EUR][1000 genomes]
rs28857291	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28894799	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34019987	0.87[EUR][1000 genomes]
rs34023726	0.96[EUR][1000 genomes]
rs34067866	0.96[EUR][1000 genomes]
rs34072573	0.86[EUR][1000 genomes]
rs4241585	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4241586	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4263427	0.90[EUR][1000 genomes]
rs4339237	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4515186	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4552491	0.90[EUR][1000 genomes]
rs56696020	0.81[AFR][1000 genomes]
rs60169811	0.81[AFR][1000 genomes]
rs6829592	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73826318	0.96[AFR][1000 genomes]
rs9307076	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307078	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77015200-77025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:77016400-77025000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:77017000-77034400	Weak transcription	Right Ventricle	heart
4	chr4:77021200-77026600	Weak transcription	Brain Hippocampus Middle	brain

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