Variant report

Variant	rs34023726
Chromosome Location	chr4:77046512-77046513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10008834	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10014749	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10015467	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10015842	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10028141	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097230	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11944608	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12331871	0.96[EUR][1000 genomes]
rs13115827	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13141895	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13152491	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1348204	0.82[ASN][1000 genomes]
rs17001385	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2197104	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28600676	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28611472	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28628345	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28635901	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28649343	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28726273	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28857291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28894799	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34019987	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34067866	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34072573	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4241585	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4241586	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4263427	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4339237	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4515186	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4552491	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6532189	0.93[ASN][1000 genomes]
rs9307076	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307078	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv470047	chr4:77033590-77096777	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv594693	chr4:77033590-77101068	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv275315	chr4:77040424-77056493	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1008318	chr4:77042356-77095658	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv537144	chr4:77042356-77095658	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv1000539	chr4:77042356-77105492	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77028000-77068600	Weak transcription	Gastric	stomach
2	chr4:77032200-77049200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:77032600-77067600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:77033000-77046800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr4:77033000-77046800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:77033000-77052000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:77033200-77046600	Strong transcription	Fetal Lung	lung
8	chr4:77033200-77058200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:77033200-77066000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:77033200-77068400	Weak transcription	Small Intestine	intestine
11	chr4:77033400-77046600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:77033400-77047800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:77033400-77048200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr4:77033400-77052000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:77033400-77052200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:77033400-77065600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:77033400-77066000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:77033400-77066600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:77033600-77047600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr4:77033600-77065600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr4:77033800-77066200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:77034000-77054000	Strong transcription	Dnd41	blood
23	chr4:77034000-77066000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:77034200-77046600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:77034400-77067200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:77035000-77068400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:77035200-77062000	Weak transcription	Esophagus	oesophagus
28	chr4:77035200-77068600	Weak transcription	Pancreas	Pancrea
29	chr4:77035400-77066000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:77035600-77068400	Weak transcription	Right Ventricle	heart
31	chr4:77036400-77054600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr4:77037200-77046600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:77038200-77062000	Weak transcription	Aorta	Aorta
34	chr4:77038800-77051600	Weak transcription	Hela-S3	cervix
35	chr4:77039000-77050400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr4:77039000-77061800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:77039000-77068200	Weak transcription	Psoas Muscle	Psoas
38	chr4:77039000-77068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:77039400-77056000	Weak transcription	Stomach Mucosa	stomach
40	chr4:77039400-77056600	Weak transcription	Brain Substantia Nigra	brain
41	chr4:77039400-77056600	Weak transcription	Fetal Brain Male	brain
42	chr4:77039400-77056800	Weak transcription	NHLF	lung
43	chr4:77039600-77057400	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:77039800-77056600	Weak transcription	Colonic Mucosa	Colon
45	chr4:77040400-77049000	Weak transcription	Fetal Brain Female	brain
46	chr4:77040800-77056800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr4:77040800-77063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:77041000-77049000	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:77041000-77049200	Weak transcription	Fetal Stomach	stomach
50	chr4:77041000-77056800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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