Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10008834	0.90[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10014749	0.90[ASN][1000 genomes]
rs10015467	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10015842	1.00[ASN][1000 genomes]
rs10028141	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11097230	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11944608	0.88[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs13115827	0.94[ASN][1000 genomes]
rs13141895	0.95[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs13152491	0.94[ASN][1000 genomes]
rs17001357	0.80[CHD][hapmap]
rs17001385	0.99[ASN][1000 genomes]
rs2197104	0.88[ASN][1000 genomes]
rs28600676	0.90[ASN][1000 genomes]
rs28611472	0.90[ASN][1000 genomes]
rs28628345	0.98[ASN][1000 genomes]
rs28635901	0.90[ASN][1000 genomes]
rs28649343	0.98[ASN][1000 genomes]
rs28726273	0.90[ASN][1000 genomes]
rs28857291	0.93[ASN][1000 genomes]
rs28894799	0.91[ASN][1000 genomes]
rs34023726	0.93[ASN][1000 genomes]
rs34067866	0.92[ASN][1000 genomes]
rs34072573	0.82[ASN][1000 genomes]
rs3816248	0.86[GIH][hapmap]
rs4263427	0.90[ASN][1000 genomes]
rs4339237	0.95[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4515186	0.97[ASN][1000 genomes]
rs4552491	0.88[ASN][1000 genomes]
rs9307076	0.96[GIH][hapmap]
rs9307078	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6532189	CCDC158	cis	parietal	SCAN
rs6532189	SCARB2	cis	Liver	GTEx
rs6532189	SCARB2	cis	multi-tissue	Pritchard
rs6532189	CDKL2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77015200-77025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:77016400-77025000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:77017000-77034400	Weak transcription	Right Ventricle	heart
4	chr4:77021200-77026600	Weak transcription	Brain Hippocampus Middle	brain

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