Variant report

Variant	rs12333294
Chromosome Location	chr6:11894077-11894078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11892381..11894125-chr6:12011693..12014534,2	K562	blood:
2	chr6:11893106..11894741-chr6:12008692..12011398,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

rs_ID	r²[population]
rs12205854	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12206622	0.83[ASN][1000 genomes]
rs13193571	0.86[ASN][1000 genomes]
rs13198234	0.83[ASN][1000 genomes]
rs13198354	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13199275	0.83[ASN][1000 genomes]
rs1830984	0.83[ASN][1000 genomes]
rs1830985	0.83[ASN][1000 genomes]
rs2092570	0.83[ASN][1000 genomes]
rs2092571	0.83[ASN][1000 genomes]
rs209790	0.83[ASN][1000 genomes]
rs209791	0.83[ASN][1000 genomes]
rs209792	0.83[ASN][1000 genomes]
rs209794	0.82[ASN][1000 genomes]
rs2103739	0.83[ASN][1000 genomes]
rs2746266	0.83[ASN][1000 genomes]
rs2746267	0.83[ASN][1000 genomes]
rs2765779	0.83[ASN][1000 genomes]
rs2765780	0.83[ASN][1000 genomes]
rs2765781	0.83[ASN][1000 genomes]
rs2876245	0.83[ASN][1000 genomes]
rs28768426	0.83[ASN][1000 genomes]
rs28885688	0.83[ASN][1000 genomes]
rs4711466	0.83[ASN][1000 genomes]
rs4711467	0.83[ASN][1000 genomes]
rs4711468	0.83[ASN][1000 genomes]
rs4711469	0.83[ASN][1000 genomes]
rs4714012	0.83[ASN][1000 genomes]
rs4714017	0.83[ASN][1000 genomes]
rs6457947	0.83[ASN][1000 genomes]
rs6457948	0.83[ASN][1000 genomes]
rs6457949	0.83[ASN][1000 genomes]
rs6457950	0.83[ASN][1000 genomes]
rs6457952	0.83[ASN][1000 genomes]
rs6457953	0.83[ASN][1000 genomes]
rs6457954	0.83[ASN][1000 genomes]
rs6457955	0.83[ASN][1000 genomes]
rs6457958	0.83[ASN][1000 genomes]
rs6457959	0.83[ASN][1000 genomes]
rs6457960	0.83[ASN][1000 genomes]
rs6899485	0.83[ASN][1000 genomes]
rs6901960	0.83[ASN][1000 genomes]
rs6909423	0.83[ASN][1000 genomes]
rs6909693	0.83[ASN][1000 genomes]
rs6910008	0.83[ASN][1000 genomes]
rs6910727	0.83[ASN][1000 genomes]
rs6910810	0.83[ASN][1000 genomes]
rs6911172	0.83[ASN][1000 genomes]
rs6915058	0.83[ASN][1000 genomes]
rs6916469	0.83[ASN][1000 genomes]
rs6919781	0.83[ASN][1000 genomes]
rs6926450	0.83[ASN][1000 genomes]
rs6929425	0.83[ASN][1000 genomes]
rs6932972	0.83[ASN][1000 genomes]
rs6932981	0.83[ASN][1000 genomes]
rs6934027	0.83[ASN][1000 genomes]
rs6937349	0.83[ASN][1000 genomes]
rs6937513	0.83[ASN][1000 genomes]
rs6940133	0.83[ASN][1000 genomes]
rs6941984	0.83[ASN][1000 genomes]
rs7452547	0.83[ASN][1000 genomes]
rs7738835	0.83[ASN][1000 genomes]
rs7743217	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7746759	0.83[ASN][1000 genomes]
rs7762981	0.83[ASN][1000 genomes]
rs7767282	0.83[ASN][1000 genomes]
rs7776229	0.83[ASN][1000 genomes]
rs9296195	0.81[ASN][1000 genomes]
rs9368948	0.88[EUR][1000 genomes]
rs9470408	0.83[ASN][1000 genomes]

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11894000-11894600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:11894000-11894600	Enhancers	K562	blood
3	chr6:11894000-11894800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:11894000-11894800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:11894000-11894800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:11894000-11894800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:11894000-11894800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:11894000-11894800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links