Variant report

Variant	rs12335962
Chromosome Location	chr9:13960309-13960310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10961339	1.00[JPT][hapmap]
rs12000837	1.00[CHB][hapmap]
rs12351326	1.00[CHB][hapmap]
rs13283743	1.00[JPT][hapmap]
rs13289170	1.00[CHB][hapmap]
rs17278798	1.00[JPT][hapmap]
rs34438293	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7023574	1.00[JPT][hapmap]
rs7030998	1.00[CHB][hapmap]
rs7031231	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7856131	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
2	chr9:13940400-13962000	Weak transcription	Left Ventricle	heart
3	chr9:13956600-13962200	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:13957800-13961400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:13958600-13960400	Enhancers	Fetal Lung	lung
6	chr9:13958800-13963600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:13960000-13960400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:13960000-13960400	Enhancers	Adipose Nuclei	Adipose
9	chr9:13960000-13960400	Enhancers	Fetal Heart	heart
10	chr9:13960000-13960400	Enhancers	Ovary	ovary
11	chr9:13960000-13960600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:13960200-13960400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:13960200-13960400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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