Variant report

Variant	rs12335966
Chromosome Location	chr9:110404451-110404452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10759246	0.85[EUR][1000 genomes]
rs10816543	0.84[EUR][1000 genomes]
rs10816544	0.84[EUR][1000 genomes]
rs10816545	0.84[EUR][1000 genomes]
rs10816546	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10978956	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10978964	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10978969	0.86[EUR][1000 genomes]
rs10978974	0.85[EUR][1000 genomes]
rs10978976	0.85[EUR][1000 genomes]
rs10978978	0.85[EUR][1000 genomes]
rs10978979	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10978980	0.85[EUR][1000 genomes]
rs10978983	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11790667	0.85[EUR][1000 genomes]
rs11791331	0.85[EUR][1000 genomes]
rs11792278	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12339172	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12341787	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12344177	0.85[EUR][1000 genomes]
rs12344206	0.88[EUR][1000 genomes]
rs12344248	0.85[EUR][1000 genomes]
rs12345493	0.84[EUR][1000 genomes]
rs12345691	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12347957	0.83[EUR][1000 genomes]
rs12348111	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12352395	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13440356	0.85[EUR][1000 genomes]
rs1523780	0.85[EUR][1000 genomes]
rs1523781	0.85[EUR][1000 genomes]
rs1523782	0.85[EUR][1000 genomes]
rs4540459	0.85[EUR][1000 genomes]
rs62568436	0.91[EUR][1000 genomes]
rs62569566	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62569567	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7027436	0.87[EUR][1000 genomes]
rs7029376	0.85[EUR][1000 genomes]
rs7029428	0.85[EUR][1000 genomes]
rs7857028	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7866207	0.86[EUR][1000 genomes]
rs7870632	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9792559	0.85[EUR][1000 genomes]
rs9792645	0.85[EUR][1000 genomes]
rs9792647	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528269	chr9:110402957-110410888	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3380470	chr9:110404146-110404658	Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3488328	chr9:110404181-110404624	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3488329	chr9:110404222-110404636	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3488331	chr9:110404368-110404551	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110400600-110407400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:110401200-110406800	Weak transcription	Placenta	Placenta
3	chr9:110401400-110407600	Weak transcription	Psoas Muscle	Psoas
4	chr9:110401600-110410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110401800-110407000	Weak transcription	HUVEC	blood vessel
6	chr9:110402000-110406800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:110402000-110407000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:110402000-110407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:110402000-110407200	Weak transcription	Adipose Nuclei	Adipose
10	chr9:110402000-110407200	Weak transcription	Fetal Stomach	stomach
11	chr9:110402000-110407400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:110402000-110407400	Weak transcription	Fetal Lung	lung
13	chr9:110402000-110407400	Weak transcription	Lung	lung
14	chr9:110402000-110407400	Weak transcription	Ovary	ovary
15	chr9:110402000-110407400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:110402000-110407400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:110402000-110407400	Weak transcription	Stomach Mucosa	stomach
18	chr9:110402000-110407600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:110402200-110406200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:110402200-110406600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr9:110402200-110407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:110402400-110406800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:110402400-110406800	Weak transcription	Fetal Thymus	thymus
24	chr9:110402400-110407000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:110402400-110407400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:110402400-110407400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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