Variant report

Variant	rs12341787
Chromosome Location	chr9:110413656-110413657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10759246	0.92[EUR][1000 genomes]
rs10816543	0.90[EUR][1000 genomes]
rs10816544	0.90[EUR][1000 genomes]
rs10816545	0.90[EUR][1000 genomes]
rs10816546	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10978964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10978969	0.93[EUR][1000 genomes]
rs10978974	0.91[EUR][1000 genomes]
rs10978976	0.92[EUR][1000 genomes]
rs10978978	0.92[EUR][1000 genomes]
rs10978979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10978980	0.92[EUR][1000 genomes]
rs10978983	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11790667	0.92[EUR][1000 genomes]
rs11791331	0.92[EUR][1000 genomes]
rs11792278	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11794132	1.00[AFR][1000 genomes]
rs12335966	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12339172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12344177	0.92[EUR][1000 genomes]
rs12344206	0.95[EUR][1000 genomes]
rs12344248	0.92[EUR][1000 genomes]
rs12345493	0.91[EUR][1000 genomes]
rs12345691	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12347957	0.90[EUR][1000 genomes]
rs12348111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13440356	0.91[EUR][1000 genomes]
rs1523780	0.92[EUR][1000 genomes]
rs1523781	0.92[EUR][1000 genomes]
rs1523782	0.92[EUR][1000 genomes]
rs4540459	0.92[EUR][1000 genomes]
rs62568436	0.84[EUR][1000 genomes]
rs62569566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62569567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027436	0.94[EUR][1000 genomes]
rs7029376	0.92[EUR][1000 genomes]
rs7029428	0.91[EUR][1000 genomes]
rs7857028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7866207	0.90[EUR][1000 genomes]
rs7870632	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9792559	0.92[EUR][1000 genomes]
rs9792645	0.91[EUR][1000 genomes]
rs9792647	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:110413000-110415400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:110413000-110437000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:110413200-110415400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110413600-110415400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links