Variant report
| Variant | rs1233709 |
|---|---|
| Chromosome Location | chr6:28173285-28173286 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28170074..28175450-chr6:28180913..28183647,5 | K562 | blood: | |
| 2 | chr6:28169001..28171000-chr6:28171450..28173526,2 | K562 | blood: | |
| 3 | chr6:28109242..28110938-chr6:28172802..28175131,2 | MCF-7 | breast: | |
| 4 | chr6:28172570..28175998-chr6:28183959..28188768,7 | K562 | blood: | |
| 5 | chr6:28154709..28159711-chr6:28172250..28177968,6 | K562 | blood: | |
| 6 | chr6:28166299..28169743-chr6:28173090..28175496,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000176933 | Chromatin interaction |
| ENSG00000198315 | Chromatin interaction |
| ENSG00000218016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1150673 | 1.00[AFR][1000 genomes] |
| rs1225604 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1679705 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1736889 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2799076 | 0.88[YRI][hapmap] |
| rs6918023 | 0.89[YRI][hapmap] |
| rs7759855 | 0.89[YRI][hapmap] |
| rs9295770 | 0.85[YRI][hapmap] |
| rs9468363 | 0.89[YRI][hapmap] |
| rs9468369 | 0.89[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883514 | chr6:28155418-28185726 | Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv883515 | chr6:28156476-28181675 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv883516 | chr6:28156476-28185726 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28172800-28173400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
