Variant report

Variant	rs9468369
Chromosome Location	chr6:28366933-28366934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28366385..28368709-chr6:28493666..28495776,2	K562	blood:
2	chr6:28315597..28319153-chr6:28366055..28369015,3	K562	blood:
3	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
4	chr6:28365591..28367177-chr6:28449783..28452341,2	K562	blood:
5	chr6:28366682..28368772-chr6:28423873..28426480,2	K562	blood:
6	chr6:28082452..28085124-chr6:28366168..28368167,2	K562	blood:
7	chr6:28302165..28304933-chr6:28366158..28368845,2	K562	blood:
8	chr6:28191542..28193155-chr6:28365970..28368318,2	K562	blood:
9	chr6:28225119..28227553-chr6:28366156..28368716,2	K562	blood:
10	chr6:28366328..28368330-chr6:28583082..28585639,2	K562	blood:
11	chr6:28365707..28367245-chr6:28405846..28408516,2	K562	blood:
12	chr6:28366328..28369247-chr6:28582607..28584582,2	K562	blood:
13	chr6:27857864..27860590-chr6:28365932..28368425,2	K562	blood:
14	chr6:28191542..28194803-chr6:28365970..28368645,4	K562	blood:
15	chr6:28109524..28111212-chr6:28366058..28368601,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224586	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000189134	Chromatin interaction
ENSG00000219262	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000251877	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000219392	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1150700	1.00[AMR][1000 genomes]
rs1150710	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233709	0.89[YRI][hapmap]
rs1679705	0.89[YRI][hapmap]
rs1736889	0.89[YRI][hapmap]
rs2799076	1.00[YRI][hapmap]
rs28713495	1.00[AMR][1000 genomes]
rs28742017	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs409029	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs452768	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6456813	1.00[AMR][1000 genomes]
rs6899496	1.00[AMR][1000 genomes]
rs6899709	1.00[AMR][1000 genomes]
rs6918023	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759855	1.00[YRI][hapmap]
rs9295770	1.00[YRI][hapmap]
rs9461438	1.00[AMR][1000 genomes]
rs9461444	1.00[AMR][1000 genomes]
rs9461467	1.00[AMR][1000 genomes]
rs9468331	1.00[AMR][1000 genomes]
rs9468340	1.00[AMR][1000 genomes]
rs9468363	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468386	1.00[AMR][1000 genomes]
rs9468389	1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28365000-28367000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:28366000-28367000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:28366000-28368000	Active TSS	HSMMtube	muscle
4	chr6:28366000-28368200	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:28366000-28368200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:28366000-28368200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:28366000-28368200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:28366200-28367000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:28366200-28367000	Weak transcription	Esophagus	oesophagus
10	chr6:28366200-28367000	Weak transcription	Gastric	stomach
11	chr6:28366200-28367000	Weak transcription	Left Ventricle	heart
12	chr6:28366200-28367000	Weak transcription	Lung	lung
13	chr6:28366200-28367000	Weak transcription	Pancreas	Pancrea
14	chr6:28366200-28367000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:28366200-28367000	Weak transcription	Small Intestine	intestine
16	chr6:28366200-28367000	Weak transcription	Spleen	Spleen
17	chr6:28366200-28367200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:28366200-28367200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:28366200-28367800	Active TSS	Muscle Satellite Cultured Cells	--
20	chr6:28366200-28367800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:28366200-28368000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:28366200-28368000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:28366200-28368000	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr6:28366200-28368000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:28366200-28368000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:28366200-28368000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:28366200-28368000	Active TSS	Placenta Amnion	Placenta Amnion
28	chr6:28366200-28368200	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:28366200-28368200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:28366200-28368200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:28366200-28368200	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr6:28366200-28368200	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr6:28366200-28368200	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:28366200-28368200	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:28366200-28368200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:28366200-28368200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr6:28366200-28368200	Active TSS	Fetal Intestine Small	intestine
38	chr6:28366200-28368200	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:28366200-28368200	Active TSS	Stomach Smooth Muscle	stomach
40	chr6:28366200-28368200	Active TSS	K562	blood
41	chr6:28366200-28368400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:28366200-28368400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:28366200-28368400	Active TSS	Brain Anterior Caudate	brain
44	chr6:28366200-28368400	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr6:28366200-28368400	Active TSS	Osteobl	bone
46	chr6:28366400-28367000	Active TSS	Brain Germinal Matrix	brain
47	chr6:28366400-28367000	Active TSS	Dnd41	blood
48	chr6:28366400-28367600	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:28366400-28367600	Active TSS	NHEK	skin
50	chr6:28366400-28367800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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