Variant report

Variant	rs452768
Chromosome Location	chr6:28520654-28520655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10447392	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1884938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28713495	1.00[AMR][1000 genomes]
rs28742017	1.00[AMR][1000 genomes]
rs409029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6456813	1.00[AMR][1000 genomes]
rs6899496	1.00[AMR][1000 genomes]
rs6899709	1.00[AMR][1000 genomes]
rs6918023	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461467	1.00[AMR][1000 genomes]
rs9468363	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468369	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468382	1.00[AMR][1000 genomes]
rs9468386	1.00[AMR][1000 genomes]
rs9468389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28510800-28521600	Weak transcription	Pancreas	Pancrea
2	chr6:28520200-28521400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:28520200-28521400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:28520400-28521200	Enhancers	HepG2	liver
5	chr6:28520400-28521400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:28520600-28521200	Enhancers	K562	blood
7	chr6:28520600-28522600	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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