Variant report

Variant	rs10447392
Chromosome Location	chr6:28641040-28641041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1884938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28742017	1.00[AMR][1000 genomes]
rs3852211	0.82[AFR][1000 genomes]
rs3999023	0.91[AFR][1000 genomes]
rs409029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs443924	0.87[AFR][1000 genomes]
rs452768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6456829	0.91[AFR][1000 genomes]
rs6456832	0.85[AFR][1000 genomes]
rs6899496	1.00[AMR][1000 genomes]
rs6899709	1.00[AMR][1000 genomes]
rs7738536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461467	1.00[AMR][1000 genomes]
rs9468382	1.00[AMR][1000 genomes]
rs9468386	1.00[AMR][1000 genomes]
rs9468389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28634800-28643000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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