Variant report
| Variant | rs28742017 |
|---|---|
| Chromosome Location | chr6:28425701-28425702 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR2E1P | TF binding region |
| ENSG00000158691 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10447392 | 1.00[AMR][1000 genomes] |
| rs1150710 | 1.00[AMR][1000 genomes] |
| rs1884938 | 1.00[AMR][1000 genomes] |
| rs28713495 | 1.00[AMR][1000 genomes] |
| rs409029 | 1.00[AMR][1000 genomes] |
| rs452768 | 1.00[AMR][1000 genomes] |
| rs6456813 | 1.00[AMR][1000 genomes] |
| rs6899496 | 1.00[AMR][1000 genomes] |
| rs6899709 | 1.00[AMR][1000 genomes] |
| rs6918023 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7738536 | 1.00[AMR][1000 genomes] |
| rs9461444 | 1.00[AMR][1000 genomes] |
| rs9461467 | 1.00[AMR][1000 genomes] |
| rs9468331 | 1.00[AMR][1000 genomes] |
| rs9468340 | 1.00[AMR][1000 genomes] |
| rs9468363 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9468369 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9468382 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9468386 | 1.00[AMR][1000 genomes] |
| rs9468389 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462666 | chr6:28417222-28574415 | Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv601210 | chr6:28417222-28574415 | Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
