Variant report
| Variant | rs6899496 |
|---|---|
| Chromosome Location | chr6:28434192-28434193 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28421971..28424210-chr6:28433666..28435835,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000219262 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10447392 | 1.00[AMR][1000 genomes] |
| rs1150710 | 1.00[AMR][1000 genomes] |
| rs1884938 | 1.00[AMR][1000 genomes] |
| rs28713495 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28742017 | 1.00[AMR][1000 genomes] |
| rs409029 | 1.00[AMR][1000 genomes] |
| rs452768 | 1.00[AMR][1000 genomes] |
| rs6456813 | 1.00[AMR][1000 genomes] |
| rs6899709 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6901990 | 1.00[YRI][hapmap] |
| rs6918023 | 1.00[AMR][1000 genomes] |
| rs7738536 | 1.00[AMR][1000 genomes] |
| rs9461444 | 1.00[AMR][1000 genomes] |
| rs9461467 | 1.00[AMR][1000 genomes] |
| rs9468331 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9468340 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9468363 | 1.00[AMR][1000 genomes] |
| rs9468369 | 1.00[AMR][1000 genomes] |
| rs9468382 | 1.00[AMR][1000 genomes] |
| rs9468386 | 1.00[AMR][1000 genomes] |
| rs9468389 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462666 | chr6:28417222-28574415 | Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv601210 | chr6:28417222-28574415 | Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28432800-28436400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
