Variant report

Variant	rs12338159
Chromosome Location	chr9:103997679-103997680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103881299..103882276-chr9:103997471..103998449,5	MCF-7	breast:
2	chr9:103476676..103477573-chr9:103997190..103998381,4	MCF-7	breast:
3	chr9:103881471..103882167-chr9:103997476..103998117,4	MCF-7	breast:
4	chr9:103364362..103365291-chr9:103997516..103998642,7	MCF-7	breast:
5	chr9:103476469..103477475-chr9:103997510..103998443,4	MCF-7	breast:
6	chr9:103363051..103364166-chr9:103997474..103998411,6	MCF-7	breast:
7	chr9:103989448..103990972-chr9:103996592..103998132,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10819912	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10989456	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12338031	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1329073	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13295287	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367755	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1831235	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35968620	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36070696	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743454	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7044697	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7047759	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs750662	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103996200-103997800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:103996200-103998000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:103997000-103998200	Enhancers	Brain Substantia Nigra	brain
4	chr9:103997200-103997800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:103997200-103998000	Enhancers	HepG2	liver
6	chr9:103997200-103998200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:103997400-103997800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:103997400-103997800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:103997400-103997800	Active TSS	Brain Cingulate Gyrus	brain
10	chr9:103997400-103997800	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr9:103997400-103997800	Enhancers	Fetal Brain Male	brain
12	chr9:103997400-103998000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:103997400-103998000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:103997400-103998200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:103997400-103998200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:103997400-103998200	Enhancers	Liver	Liver
17	chr9:103997400-103998400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr9:103997600-103997800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:103997600-103997800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:103997600-103997800	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr9:103997600-103997800	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr9:103997600-103998200	Active TSS	Brain Inferior Temporal Lobe	brain

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