Variant report

Variant	rs35968620
Chromosome Location	chr9:103992843-103992844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10116447	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10116810	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10124241	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10819912	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10819913	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10989450	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10989456	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12005858	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12338031	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12338159	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1329071	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1329073	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1329074	0.96[ASN][1000 genomes]
rs1329075	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13295287	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1360065	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1367755	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1367756	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1475499	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1816366	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1819372	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1831235	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1988735	0.84[ASN][1000 genomes]
rs36070696	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743454	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7044697	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs750662	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7853007	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103987400-103995200	Weak transcription	Fetal Brain Female	brain
2	chr9:103989600-103993400	Weak transcription	HepG2	liver
3	chr9:103991200-103994400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:103991400-103994800	Enhancers	Brain Cingulate Gyrus	brain
5	chr9:103992000-103993000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:103992000-103994200	Enhancers	Brain Substantia Nigra	brain
7	chr9:103992000-103994600	Enhancers	Brain Anterior Caudate	brain
8	chr9:103992000-103994800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:103992000-103995400	Enhancers	Liver	Liver
10	chr9:103992400-103993600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr9:103992400-103994600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:103992400-103997400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:103992600-103993000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:103992600-103993000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:103992600-103993000	Enhancers	Brain Angular Gyrus	brain
16	chr9:103992600-103993800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:103992800-103993400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:103992800-103994200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:103992800-103994600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:103992800-103994800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr9:103992800-103995600	Enhancers	Brain Hippocampus Middle	brain
22	chr9:103992800-103997400	Weak transcription	Fetal Brain Male	brain

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