Variant report

Variant	rs12340110
Chromosome Location	chr9:95755978-95755979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95751099..95753826-chr9:95754095..95756433,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10116009	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122374	1.00[EUR][1000 genomes]
rs10124709	1.00[EUR][1000 genomes]
rs12342477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349817	1.00[EUR][1000 genomes]
rs12351360	1.00[EUR][1000 genomes]
rs28864474	1.00[EUR][1000 genomes]
rs73526860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95748200-95756000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
2	chr9:95752600-95766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:95753800-95756000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:95754000-95756000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr9:95754600-95756000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr9:95755000-95766200	Weak transcription	Lung	lung
7	chr9:95755200-95756000	Strong transcription	Fetal Thymus	thymus
8	chr9:95755200-95761400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:95755200-95764800	Weak transcription	Spleen	Spleen
10	chr9:95755200-95765800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:95755400-95756000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr9:95755400-95761600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:95755400-95766000	Weak transcription	Pancreas	Pancrea
14	chr9:95755600-95756000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:95755600-95758000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:95755600-95759000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:95755600-95760800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:95755600-95760800	Weak transcription	Thymus	Thymus
19	chr9:95755600-95761400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95755600-95761600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:95755600-95761600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:95755600-95762000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr9:95755600-95762200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:95755600-95762600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:95755600-95764000	Weak transcription	Dnd41	blood
26	chr9:95755800-95760800	Weak transcription	Primary T cells from cord blood	blood
27	chr9:95755800-95760800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:95755800-95760800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:95755800-95761600	Weak transcription	Primary B cells from cord blood	blood
30	chr9:95755800-95761600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:95755800-95761600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:95755800-95762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr9:95755800-95765800	Weak transcription	GM12878-XiMat	blood

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