Variant report

Variant	rs12349817
Chromosome Location	chr9:95744152-95744153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10116009	1.00[EUR][1000 genomes]
rs10122374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10124709	1.00[EUR][1000 genomes]
rs12340110	1.00[EUR][1000 genomes]
rs12342477	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12351360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28864474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95735400-95752600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:95740000-95754800	Weak transcription	Gastric	stomach
3	chr9:95740000-95754800	Weak transcription	Pancreas	Pancrea
4	chr9:95740200-95744400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr9:95740200-95745200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:95740200-95746200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:95740200-95746200	Weak transcription	Thymus	Thymus
8	chr9:95740200-95750000	Weak transcription	Esophagus	oesophagus
9	chr9:95740200-95750600	Weak transcription	Lung	lung
10	chr9:95741600-95746200	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:95741800-95744600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:95742800-95744400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr9:95742800-95745200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:95743000-95744400	Weak transcription	Primary B cells from cord blood	blood
15	chr9:95743000-95744400	Enhancers	Primary T cells from cord blood	blood
16	chr9:95743000-95744400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:95743000-95744600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:95743000-95744600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:95743000-95744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:95743000-95744800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr9:95743000-95746200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr9:95743000-95747600	ZNF genes & repeats	Dnd41	blood
23	chr9:95743200-95744400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr9:95743200-95744400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:95743200-95744800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:95743200-95745200	Strong transcription	Fetal Thymus	thymus
27	chr9:95743200-95746000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr9:95743200-95746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:95743600-95744400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr9:95743800-95744400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr9:95743800-95744800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:95743800-95745200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:95743800-95748200	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links