Variant report

Variant	rs12342839
Chromosome Location	chr9:101763904-101763905
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101763772..101766220-chr9:101865272..101867903,2	MCF-7	breast:
2	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
3	chr9:101762797..101765082-chr9:101923950..101926109,2	MCF-7	breast:
4	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17784384	1.00[EUR][1000 genomes]
rs2274963	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
2	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:101761600-101767400	Weak transcription	Colonic Mucosa	Colon
4	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
6	chr9:101761600-101814400	Weak transcription	Gastric	stomach
7	chr9:101761800-101764000	Weak transcription	Hela-S3	cervix
8	chr9:101761800-101765200	Weak transcription	Fetal Stomach	stomach
9	chr9:101761800-101765400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:101761800-101765400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:101761800-101765600	Weak transcription	Left Ventricle	heart
12	chr9:101761800-101765800	Weak transcription	Ovary	ovary
13	chr9:101761800-101765800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:101761800-101768200	Weak transcription	Spleen	Spleen
15	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
16	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:101762400-101764200	Weak transcription	NHLF	lung
18	chr9:101762600-101764000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:101762600-101764000	Genic enhancers	Placenta	Placenta
20	chr9:101762600-101769400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr9:101762800-101764000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:101762800-101764000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr9:101762800-101764000	Genic enhancers	Fetal Muscle Leg	muscle
24	chr9:101762800-101764200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr9:101762800-101764200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:101762800-101764200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr9:101762800-101764200	Genic enhancers	Adipose Nuclei	Adipose
28	chr9:101762800-101764400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:101762800-101764600	Enhancers	K562	blood
30	chr9:101762800-101765400	Enhancers	Primary T cells from cord blood	blood
31	chr9:101762800-101765400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:101762800-101769000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:101762800-101769600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr9:101763000-101764000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr9:101763000-101764400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr9:101763000-101764600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:101763000-101764600	Enhancers	Fetal Thymus	thymus
38	chr9:101763000-101764800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:101763000-101764800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr9:101763000-101764800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr9:101763000-101765000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr9:101763000-101765000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr9:101763000-101765000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr9:101763000-101765200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr9:101763000-101765400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:101763000-101765400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr9:101763000-101765600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:101763000-101765600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:101763000-101765600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:101763000-101765800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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