Variant report

Variant	rs2274963
Chromosome Location	chr9:101763091-101763092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101762428..101763408-chr9:101902234..101903630,9	MCF-7	breast:
2	chr9:101610611..101611507-chr9:101762517..101763150,2	K562	blood:
3	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
4	chr9:101762134..101763385-chr9:101902694..101903814,11	K562	blood:
5	chr9:101736882..101737407-chr9:101762143..101763138,2	MCF-7	breast:
6	chr9:101762797..101765082-chr9:101923950..101926109,2	MCF-7	breast:
7	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:
8	chr9:101762444..101763486-chr9:101902217..101903969,25	MCF-7	breast:
9	chr9:101762734..101763562-chr9:101904143..101904831,2	MCF-7	breast:
10	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction
ENSG00000119514	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12342839	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16918103	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16918110	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16918124	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16918128	0.80[ASN][1000 genomes]
rs17784384	1.00[EUR][1000 genomes]
rs3818760	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs57803670	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62561243	0.86[ASN][1000 genomes]
rs7035837	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7859159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs914993	0.83[CHD][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101757400-101763400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
3	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:101761000-101763600	Enhancers	Fetal Heart	heart
5	chr9:101761200-101763200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:101761200-101763800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:101761400-101763400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:101761600-101763200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:101761600-101763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:101761600-101763400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:101761600-101767400	Weak transcription	Colonic Mucosa	Colon
12	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
14	chr9:101761600-101814400	Weak transcription	Gastric	stomach
15	chr9:101761800-101763200	Weak transcription	HSMMtube	muscle
16	chr9:101761800-101763200	Weak transcription	NHDF-Ad	bronchial
17	chr9:101761800-101763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101761800-101764000	Weak transcription	Hela-S3	cervix
19	chr9:101761800-101765200	Weak transcription	Fetal Stomach	stomach
20	chr9:101761800-101765400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:101761800-101765400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:101761800-101765600	Weak transcription	Left Ventricle	heart
23	chr9:101761800-101765800	Weak transcription	Ovary	ovary
24	chr9:101761800-101765800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:101761800-101768200	Weak transcription	Spleen	Spleen
26	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
27	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:101762400-101764200	Weak transcription	NHLF	lung
29	chr9:101762600-101764000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:101762600-101764000	Genic enhancers	Placenta	Placenta
31	chr9:101762600-101769400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:101762800-101763200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:101762800-101763200	Enhancers	Right Ventricle	heart
34	chr9:101762800-101763600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr9:101762800-101763600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr9:101762800-101763600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:101762800-101763600	Genic enhancers	Duodenum Smooth Muscle	Duodenum
38	chr9:101762800-101763800	Enhancers	Thymus	Thymus
39	chr9:101762800-101763800	Enhancers	HSMM	muscle
40	chr9:101762800-101764000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:101762800-101764000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr9:101762800-101764000	Genic enhancers	Fetal Muscle Leg	muscle
43	chr9:101762800-101764200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr9:101762800-101764200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:101762800-101764200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr9:101762800-101764200	Genic enhancers	Adipose Nuclei	Adipose
47	chr9:101762800-101764400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:101762800-101764600	Enhancers	K562	blood
49	chr9:101762800-101765400	Enhancers	Primary T cells from cord blood	blood
50	chr9:101762800-101765400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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