Variant report

Variant	rs16918124
Chromosome Location	chr9:101761125-101761126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101611820..101612398-chr9:101760720..101761431,2	K562	blood:
2	chr9:101757724..101761274-chr9:101835762..101837823,3	K562	blood:
3	chr9:101622815..101623852-chr9:101760749..101761771,5	MCF-7	breast:
4	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
5	chr9:101610013..101612448-chr9:101759740..101762487,2	MCF-7	breast:
6	chr9:101622816..101623807-chr9:101760819..101761758,4	K562	blood:
7	chr9:101760174..101761965-chr9:101764160..101766601,2	K562	blood:
8	chr9:101736926..101737820-chr9:101760843..101761915,4	MCF-7	breast:
9	chr9:101568251..101569109-chr9:101760833..101761361,2	MCF-7	breast:
10	chr9:101610533..101611669-chr9:101760817..101761806,13	K562	blood:
11	chr9:101757461..101761274-chr9:101835859..101838201,6	K562	blood:
12	chr9:101751752..101752252-chr9:101761082..101761595,2	MCF-7	breast:
13	chr9:101571089..101573557-chr9:101759747..101761480,2	MCF-7	breast:
14	chr9:101610634..101611514-chr9:101760908..101761782,4	MCF-7	breast:
15	chr9:101623039..101623786-chr9:101760943..101761815,3	MCF-7	breast:
16	chr9:101736884..101738167-chr9:101760897..101761815,6	MCF-7	breast:
17	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:
18	chr9:101610463..101611441-chr9:101760900..101761817,9	MCF-7	breast:
19	chr9:101760854..101761829-chr9:101902660..101903198,2	MCF-7	breast:
20	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119514	Chromatin interaction
ENSG00000267026	Chromatin interaction
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16918103	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16918110	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16918128	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2274963	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs3818760	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55839374	0.88[AFR][1000 genomes]
rs57803670	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58938824	0.94[AFR][1000 genomes]
rs62561243	0.86[ASN][1000 genomes]
rs7035837	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73503709	0.88[AFR][1000 genomes]
rs7859159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs914993	0.91[MEX][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101754800-101761800	Enhancers	Right Ventricle	heart
2	chr9:101755600-101761800	Enhancers	Left Ventricle	heart
3	chr9:101755800-101761800	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:101756400-101761400	Weak transcription	Spleen	Spleen
5	chr9:101757400-101763400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101758000-101761200	Weak transcription	Colonic Mucosa	Colon
7	chr9:101759000-101762000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:101759200-101761800	Genic enhancers	Fetal Muscle Leg	muscle
9	chr9:101759200-101761800	Genic enhancers	Fetal Stomach	stomach
10	chr9:101759200-101761800	Enhancers	NHDF-Ad	bronchial
11	chr9:101759200-101762000	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr9:101759600-101761600	Enhancers	HSMM	muscle
13	chr9:101759600-101762600	Enhancers	Placenta	Placenta
14	chr9:101759800-101761200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr9:101759800-101761600	Enhancers	Lung	lung
16	chr9:101759800-101761800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:101759800-101761800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:101759800-101762400	Enhancers	NHLF	lung
19	chr9:101760000-101761600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:101760000-101761800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:101760000-101761800	Enhancers	HSMMtube	muscle
22	chr9:101760200-101761200	Weak transcription	Right Atrium	heart
23	chr9:101760200-101761200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:101760200-101762200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
26	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr9:101760600-101761200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:101760600-101761200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:101760600-101761200	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr9:101760600-101761600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:101760800-101761200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr9:101760800-101761200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr9:101760800-101761200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr9:101760800-101761200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr9:101760800-101761200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:101760800-101761200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:101760800-101761200	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr9:101760800-101761400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
41	chr9:101760800-101761400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr9:101760800-101761400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr9:101760800-101761400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:101760800-101761400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr9:101760800-101761400	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr9:101760800-101761400	Flanking Active TSS	Osteobl	bone
47	chr9:101760800-101761600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr9:101760800-101761600	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr9:101760800-101761600	Enhancers	Brain Cingulate Gyrus	brain
50	chr9:101760800-101761600	Enhancers	Fetal Intestine Small	intestine

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