Variant report

Variant	rs16918110
Chromosome Location	chr9:101749504-101749505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101748657..101752493-chr9:101836719..101838715,3	K562	blood:
2	chr9:101747842..101750157-chr9:101758155..101760265,2	MCF-7	breast:
3	chr9:101742011..101744498-chr9:101748952..101750643,2	MCF-7	breast:
4	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16918103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16918124	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16918128	0.84[AMR][1000 genomes]
rs2274963	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3818760	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57803670	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61999303	1.00[AFR][1000 genomes]
rs62561243	0.81[ASN][1000 genomes]
rs7035837	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7859159	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs874165	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101737800-101760800	Weak transcription	Gastric	stomach
2	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
3	chr9:101740400-101756800	Weak transcription	Ovary	ovary
4	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
5	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101746400-101750600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:101746800-101749600	Weak transcription	NHLF	lung
10	chr9:101746800-101750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:101747800-101750200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:101747800-101751200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101748200-101751600	Weak transcription	Pancreas	Pancrea
15	chr9:101748800-101750200	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:101749000-101752600	Enhancers	Colon Smooth Muscle	Colon
17	chr9:101749000-101753200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:101749200-101749800	Genic enhancers	Fetal Stomach	stomach
19	chr9:101749200-101749800	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
20	chr9:101749200-101750400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr9:101749200-101750400	Enhancers	Fetal Brain Female	brain
22	chr9:101749200-101750400	Genic enhancers	Fetal Muscle Trunk	muscle
23	chr9:101749200-101750800	Enhancers	Placenta	Placenta
24	chr9:101749200-101750800	Enhancers	Left Ventricle	heart
25	chr9:101749200-101751800	Genic enhancers	Fetal Muscle Leg	muscle
26	chr9:101749200-101752000	Enhancers	Fetal Brain Male	brain
27	chr9:101749200-101753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:101749200-101753000	Genic enhancers	Adipose Nuclei	Adipose
29	chr9:101749200-101753000	Enhancers	Right Atrium	heart
30	chr9:101749200-101753000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:101749200-101753200	Enhancers	Right Ventricle	heart
32	chr9:101749400-101749600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:101749400-101749600	Enhancers	Brain Cingulate Gyrus	brain
34	chr9:101749400-101749800	Enhancers	HSMMtube	muscle
35	chr9:101749400-101750200	Enhancers	Lung	lung
36	chr9:101749400-101750400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:101749400-101750400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:101749400-101750400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:101749400-101751400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:101749400-101751600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:101749400-101752800	Enhancers	Aorta	Aorta
42	chr9:101749400-101753000	Enhancers	NHDF-Ad	bronchial

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