Variant report

Variant	rs61999303
Chromosome Location	chr9:101748344-101748345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101747842..101750157-chr9:101758155..101760265,2	MCF-7	breast:
2	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:
3	chr9:101743138..101745220-chr9:101746552..101748819,2	K562	blood:
4	chr9:101746248..101748364-chr9:101750240..101752168,2	MCF-7	breast:
5	chr9:101747587..101749233-chr9:101899420..101901955,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16918110	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101760800	Weak transcription	Gastric	stomach
3	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
5	chr9:101740400-101756800	Weak transcription	Ovary	ovary
6	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
8	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:101741800-101748800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:101742800-101748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:101746400-101750600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:101746600-101749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:101746600-101749200	Weak transcription	Placenta	Placenta
16	chr9:101746600-101749200	Weak transcription	Right Ventricle	heart
17	chr9:101746600-101749400	Weak transcription	Lung	lung
18	chr9:101746800-101749000	Weak transcription	HSMMtube	muscle
19	chr9:101746800-101749600	Weak transcription	NHLF	lung
20	chr9:101746800-101750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:101747000-101749200	Weak transcription	Right Atrium	heart
23	chr9:101747000-101749400	Weak transcription	NHDF-Ad	bronchial
24	chr9:101747800-101749200	Strong transcription	Fetal Muscle Leg	muscle
25	chr9:101747800-101749200	Strong transcription	Fetal Stomach	stomach
26	chr9:101747800-101750200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:101747800-101751200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:101748000-101749200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:101748000-101749200	Strong transcription	Adipose Nuclei	Adipose
30	chr9:101748000-101749200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:101748200-101748400	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr9:101748200-101749200	Weak transcription	Left Ventricle	heart
33	chr9:101748200-101749200	Genic enhancers	Stomach Smooth Muscle	stomach
34	chr9:101748200-101749400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:101748200-101751600	Weak transcription	Pancreas	Pancrea

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