Variant report

Variant	rs874165
Chromosome Location	chr9:101777601-101777602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101775654..101777747-chr9:101787081..101788850,2	K562	blood:
2	chr9:101776708..101778564-chr9:101866175..101867767,2	MCF-7	breast:
3	chr9:101568881..101571494-chr9:101775454..101777788,2	K562	blood:
4	chr9:101776785..101779088-chr9:101779384..101782264,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction
ENSG00000119514	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10988549	0.80[AFR][1000 genomes]
rs16918110	0.80[AMR][1000 genomes]
rs16918128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818760	0.80[AMR][1000 genomes]
rs62561243	0.87[ASN][1000 genomes]
rs73503744	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73503746	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs914993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
3	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:101763600-101778000	Weak transcription	HSMMtube	muscle
5	chr9:101767600-101782000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:101768800-101778000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
8	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:101769400-101777800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:101769400-101777800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:101772800-101778000	Weak transcription	Ovary	ovary
12	chr9:101773000-101777800	Weak transcription	Left Ventricle	heart
13	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
14	chr9:101774000-101777800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:101774600-101781200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:101774800-101784600	Strong transcription	Fetal Muscle Leg	muscle
17	chr9:101775200-101778000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:101775400-101782400	Strong transcription	Stomach Smooth Muscle	stomach
19	chr9:101775400-101784800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr9:101775600-101785200	Strong transcription	Adipose Nuclei	Adipose
21	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
22	chr9:101776800-101778600	Weak transcription	K562	blood
23	chr9:101776800-101781200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:101777000-101779200	Strong transcription	Placenta	Placenta
25	chr9:101777000-101780600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:101777000-101781600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101777000-101785600	Weak transcription	Thymus	Thymus
28	chr9:101777000-101788000	Weak transcription	Esophagus	oesophagus
29	chr9:101777200-101780400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:101777400-101785800	Strong transcription	Fetal Stomach	stomach
31	chr9:101777600-101777800	Enhancers	Hela-S3	cervix
32	chr9:101777600-101778400	Strong transcription	Right Ventricle	heart
33	chr9:101777600-101780000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:101777600-101781000	Weak transcription	NHDF-Ad	bronchial
35	chr9:101777600-101781800	Weak transcription	Placenta Amnion	Placenta Amnion

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