Variant report

Variant	rs1234305
Chromosome Location	chr1:173117771-173117772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10912551	0.86[CHB][hapmap]
rs1234293	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1234297	0.81[ASN][1000 genomes]
rs1234299	0.88[ASN][1000 genomes]
rs1234306	0.87[ASN][1000 genomes]
rs1234309	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1234310	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv946507	chr1:173109131-173118311	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173104400-173119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173116000-173118400	Strong transcription	HSMMtube	muscle
3	chr1:173116200-173120400	Weak transcription	Right Ventricle	heart
4	chr1:173116400-173118000	ZNF genes & repeats	HSMM	muscle
5	chr1:173117400-173117800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:173117400-173118000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:173117600-173118000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:173117600-173119400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:173117600-173119800	Enhancers	Placenta	Placenta
10	chr1:173117600-173122000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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