Variant report

Variant	rs10912551
Chromosome Location	chr1:173119967-173119968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11808060	1.00[YRI][hapmap]
rs17346501	1.00[YRI][hapmap]
rs4916308	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916309	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60582520	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173116200-173120400	Weak transcription	Right Ventricle	heart
2	chr1:173117600-173122000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:173117800-173120000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:173118200-173122800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:173119200-173122400	Strong transcription	HSMM	muscle
6	chr1:173119600-173121800	Weak transcription	HSMMtube	muscle
7	chr1:173119800-173123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:173119800-173130200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links