The 2.0 version of rSNPBase

Variant report

Variant rs11808060
Chromosome Location chr1:173173819-173173820
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173160400-173174400 Weak transcription Spleen Spleen
3 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:173170400-173177000 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:173171000-173176400 Flanking Active TSS Dnd41 blood
6 chr1:173171400-173174400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:173171400-173174600 Weak transcription NHDF-Ad bronchial
8 chr1:173171600-173174600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:173171800-173174400 Weak transcription Fetal Stomach stomach
10 chr1:173171800-173175600 Flanking Active TSS Primary hematopoietic stem cells blood
11 chr1:173172000-173174000 Weak transcription Fetal Lung lung
12 chr1:173172000-173174400 Weak transcription HMEC breast
13 chr1:173172000-173174600 Enhancers Primary T killer naive cells fromperipheralblood blood
14 chr1:173172000-173174600 Weak transcription Fetal Heart heart
15 chr1:173172000-173181200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:173172200-173174000 Weak transcription NHEK skin
17 chr1:173172200-173174000 Weak transcription Osteobl bone
18 chr1:173172200-173174200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:173172200-173174200 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:173172200-173174400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:173172200-173174400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:173172200-173174400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:173172200-173174400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:173172200-173174400 Weak transcription Right Atrium heart
25 chr1:173172200-173174400 Active TSS GM12878-XiMat blood
26 chr1:173172200-173174400 Active TSS HepG2 liver
27 chr1:173172200-173174400 Weak transcription NH-A brain
28 chr1:173172200-173174600 Weak transcription Colon Smooth Muscle Colon
29 chr1:173172200-173174600 Weak transcription Ovary ovary
30 chr1:173172400-173174800 Active TSS HSMM muscle
31 chr1:173172400-173175600 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr1:173172800-173174400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:173172800-173174400 Enhancers Primary T cells from cord blood blood
34 chr1:173172800-173174400 Enhancers Primary T helper naive cells from peripheral blood blood
35 chr1:173172800-173174400 Enhancers Primary T helper naive cells fromperipheralblood blood
36 chr1:173172800-173174600 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr1:173172800-173177000 Enhancers Primary T helper cells fromperipheralblood blood
38 chr1:173172800-173179400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr1:173173000-173174400 Enhancers Thymus Thymus
40 chr1:173173000-173174800 Enhancers Primary T helper 17 cells PMA-I stimulated --
41 chr1:173173000-173177000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
42 chr1:173173200-173174000 Active TSS HUVEC blood vessel
43 chr1:173173200-173174400 Enhancers Primary B cells from cord blood blood
44 chr1:173173200-173174400 Enhancers Primary T helper cells PMA-I stimulated --
45 chr1:173173200-173174800 Active TSS HSMMtube muscle
46 chr1:173173200-173176400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr1:173173400-173174000 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:173173400-173174400 Enhancers Primary B cells from peripheral blood blood
49 chr1:173173400-173175200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
50 chr1:173173800-173174400 Active TSS NHLF lung

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Last update: Aug 31, 2015