The 2.0 version of rSNPBase

Variant report

Variant rs3850641
Chromosome Location chr1:173175832-173175833
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:173170400-173177000 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:173171000-173176400 Flanking Active TSS Dnd41 blood
5 chr1:173172000-173181200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:173172800-173177000 Enhancers Primary T helper cells fromperipheralblood blood
7 chr1:173172800-173179400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:173173000-173177000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr1:173173200-173176400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr1:173173800-173176400 Enhancers Primary T cells fromperipheralblood blood
11 chr1:173173800-173177000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:173174000-173176000 Enhancers Fetal Lung lung
13 chr1:173174000-173176000 Enhancers Osteobl bone
14 chr1:173174000-173176800 Enhancers NHEK skin
15 chr1:173174200-173176000 Enhancers Muscle Satellite Cultured Cells --
16 chr1:173174400-173176000 Enhancers Primary monocytes fromperipheralblood blood
17 chr1:173174400-173176000 Enhancers Adipose Nuclei Adipose
18 chr1:173174400-173176200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:173174400-173176200 Enhancers Right Atrium heart
20 chr1:173174400-173176400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:173174400-173176400 Enhancers Duodenum Mucosa Duodenum
22 chr1:173174400-173176600 Enhancers Sigmoid Colon Sigmoid Colon
23 chr1:173174400-173177000 Enhancers Placenta Amnion Placenta Amnion
24 chr1:173174400-173177000 Flanking Active TSS HUVEC blood vessel
25 chr1:173174400-173177600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:173174600-173176400 Enhancers Fetal Heart heart
27 chr1:173174800-173176600 Enhancers Primary B cells from peripheral blood blood
28 chr1:173174800-173176600 Enhancers Primary T killer naive cells fromperipheralblood blood
29 chr1:173174800-173177200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:173174800-173179400 Enhancers HepG2 liver
31 chr1:173175000-173176000 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr1:173175000-173176000 Weak transcription Brain Hippocampus Middle brain
33 chr1:173175000-173176000 Weak transcription Gastric stomach
34 chr1:173175000-173176000 Weak transcription Ovary ovary
35 chr1:173175000-173176000 Weak transcription Pancreas Pancrea
36 chr1:173175000-173176000 Weak transcription Thymus Thymus
37 chr1:173175000-173176200 Weak transcription Brain Substantia Nigra brain
38 chr1:173175000-173176200 Enhancers Fetal Muscle Leg muscle
39 chr1:173175000-173176600 Enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr1:173175000-173176600 Enhancers Primary T killer memory cells from peripheral blood blood
41 chr1:173175000-173176600 Enhancers Fetal Thymus thymus
42 chr1:173175000-173176800 Enhancers Primary T helper naive cells fromperipheralblood blood
43 chr1:173175200-173176200 Weak transcription Fetal Stomach stomach
44 chr1:173175200-173176200 Active TSS HSMMtube muscle
45 chr1:173175200-173176600 Enhancers Primary B cells from cord blood blood
46 chr1:173175200-173176600 Enhancers Primary T helper naive cells from peripheral blood blood
47 chr1:173175200-173176800 Enhancers Primary T cells from cord blood blood
48 chr1:173175200-173177000 Enhancers Primary T helper cells PMA-I stimulated --
49 chr1:173175200-173177000 Enhancers Primary T helper 17 cells PMA-I stimulated --
50 chr1:173175200-173179400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015