Variant report

Variant	rs2422334
Chromosome Location	chr1:173189389-173189390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3850641	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3861953	1.00[JPT][hapmap]
rs844646	0.82[ASN][1000 genomes]
rs844665	1.00[JPT][hapmap]
rs844666	1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2422334	TNFSF18	cis	cerebellum	SCAN
rs2422334	TNFSF18	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173175200-173193000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:173175800-173193000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:173177800-173195200	Weak transcription	HSMMtube	muscle
4	chr1:173182400-173192000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:173186400-173191600	Weak transcription	NHEK	skin
6	chr1:173186600-173191800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:173187400-173191800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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