The 2.0 version of rSNPBase

Variant report

Variant rs17346501
Chromosome Location chr1:173157541-173157542
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173132200-173158800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:173143000-173159000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:173148600-173159200 Weak transcription Lung lung
4 chr1:173150200-173159600 Weak transcription Primary T cells from cord blood blood
5 chr1:173150600-173157600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr1:173150600-173157800 Strong transcription HSMM muscle
7 chr1:173152000-173159400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:173152200-173158000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr1:173152400-173158400 Strong transcription HUVEC blood vessel
10 chr1:173153600-173159400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr1:173153600-173159400 Weak transcription Brain Anterior Caudate brain
12 chr1:173153800-173159400 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:173154000-173159200 Weak transcription Left Ventricle heart
14 chr1:173154200-173159200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:173154400-173176200 Weak transcription Aorta Aorta
16 chr1:173154800-173164600 Weak transcription Primary B cells from cord blood blood
17 chr1:173155400-173158800 Weak transcription Adipose Nuclei Adipose
18 chr1:173155400-173159400 Weak transcription Fetal Stomach stomach
19 chr1:173155600-173159400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr1:173155600-173159400 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:173155600-173159400 Weak transcription Spleen Spleen
22 chr1:173155800-173159600 Weak transcription Thymus Thymus
23 chr1:173156000-173159400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:173156000-173159400 Weak transcription Ovary ovary
25 chr1:173156000-173159400 Weak transcription HepG2 liver
26 chr1:173156200-173158400 Weak transcription Dnd41 blood
27 chr1:173156200-173159400 Weak transcription Brain Substantia Nigra brain
28 chr1:173156600-173159600 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:173156800-173158200 Weak transcription Primary hematopoietic stem cells blood
30 chr1:173156800-173159000 Weak transcription Fetal Muscle Leg muscle
31 chr1:173157000-173158200 Strong transcription HSMMtube muscle
32 chr1:173157200-173158200 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr1:173157200-173159400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:173157400-173158400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015