Variant report

Variant	rs4113832
Chromosome Location	chr1:173159620-173159621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172940580..172943092-chr1:173158852..173161378,2	K562	blood:
2	chr1:173158069..173160329-chr1:173169696..173171917,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10465507	1.00[ASN][1000 genomes]
rs10489266	1.00[ASN][1000 genomes]
rs10489268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798264	1.00[ASN][1000 genomes]
rs10912558	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912561	1.00[ASN][1000 genomes]
rs11587348	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801818	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806687	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807031	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808060	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12120808	0.82[ASN][1000 genomes]
rs12125395	0.82[ASN][1000 genomes]
rs12138547	0.82[ASN][1000 genomes]
rs12141186	0.82[ASN][1000 genomes]
rs12144635	0.82[ASN][1000 genomes]
rs12144665	0.82[ASN][1000 genomes]
rs17300347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300677	0.82[ASN][1000 genomes]
rs17300754	0.82[ASN][1000 genomes]
rs17346501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372309	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4090392	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916210	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916314	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074681	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57928823	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828267	0.82[ASN][1000 genomes]
rs72722845	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722865	0.82[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173154800-173164600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:173157800-173162200	Genic enhancers	HSMM	muscle
4	chr1:173158000-173159800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:173158200-173160800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:173158400-173160400	Enhancers	Fetal Thymus	thymus
7	chr1:173158400-173160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:173158400-173161000	Enhancers	Dnd41	blood
9	chr1:173158600-173160600	Enhancers	HUVEC	blood vessel
10	chr1:173158600-173160800	Enhancers	Fetal Heart	heart
11	chr1:173158800-173160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:173158800-173160800	Enhancers	Fetal Muscle Trunk	muscle
13	chr1:173158800-173160800	Enhancers	Osteobl	bone
14	chr1:173158800-173161000	Enhancers	HMEC	breast
15	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:173159000-173160000	Enhancers	Brain Hippocampus Middle	brain
17	chr1:173159000-173160400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:173159000-173160800	Enhancers	Fetal Muscle Leg	muscle
19	chr1:173159200-173159800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:173159200-173159800	Enhancers	Colon Smooth Muscle	Colon
21	chr1:173159200-173160000	Enhancers	Small Intestine	intestine
22	chr1:173159200-173160000	Enhancers	Stomach Mucosa	stomach
23	chr1:173159200-173160200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:173159200-173160400	Enhancers	Lung	lung
25	chr1:173159200-173160400	Enhancers	Rectal Smooth Muscle	rectum
26	chr1:173159200-173160400	Flanking Active TSS	Hela-S3	cervix
27	chr1:173159200-173160600	Enhancers	Fetal Brain Male	brain
28	chr1:173159200-173160800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:173159200-173160800	Enhancers	Psoas Muscle	Psoas
30	chr1:173159200-173160800	Enhancers	NHDF-Ad	bronchial
31	chr1:173159200-173160800	Enhancers	NHEK	skin
32	chr1:173159200-173161000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:173159200-173161000	Enhancers	Liver	Liver
34	chr1:173159200-173161200	Enhancers	Left Ventricle	heart
35	chr1:173159400-173159800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:173159400-173159800	Enhancers	Brain Anterior Caudate	brain
37	chr1:173159400-173159800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:173159400-173159800	Enhancers	Esophagus	oesophagus
39	chr1:173159400-173159800	Enhancers	Fetal Kidney	kidney
40	chr1:173159400-173159800	Enhancers	Fetal Stomach	stomach
41	chr1:173159400-173159800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr1:173159400-173160000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr1:173159400-173160000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:173159400-173160000	Enhancers	Brain Angular Gyrus	brain
45	chr1:173159400-173160000	Enhancers	Brain Cingulate Gyrus	brain
46	chr1:173159400-173160000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr1:173159400-173160000	Enhancers	Fetal Brain Female	brain
48	chr1:173159400-173160000	Enhancers	Placenta	Placenta
49	chr1:173159400-173160000	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr1:173159400-173160000	Enhancers	Rectal Mucosa Donor 31	rectum

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