The 2.0 version of rSNPBase

Variant report

Variant rs61826345
Chromosome Location chr1:173154354-173154355
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:24 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173132200-173158800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:173143000-173159000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:173148600-173159200 Weak transcription Lung lung
4 chr1:173149000-173154400 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr1:173149000-173154800 Weak transcription Dnd41 blood
6 chr1:173150200-173159600 Weak transcription Primary T cells from cord blood blood
7 chr1:173150600-173157600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:173150600-173157800 Strong transcription HSMM muscle
9 chr1:173150800-173156200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:173151000-173156400 Weak transcription Fetal Muscle Leg muscle
11 chr1:173152000-173159400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:173152200-173158000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:173152400-173158400 Strong transcription HUVEC blood vessel
14 chr1:173152600-173155400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:173152600-173156800 Strong transcription Primary hematopoietic stem cells blood
16 chr1:173152800-173154600 Weak transcription Brain Substantia Nigra brain
17 chr1:173153600-173155200 Weak transcription Ovary ovary
18 chr1:173153600-173155200 Weak transcription HepG2 liver
19 chr1:173153600-173156400 Strong transcription HSMMtube muscle
20 chr1:173153600-173159400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:173153600-173159400 Weak transcription Brain Anterior Caudate brain
22 chr1:173153800-173159400 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:173154000-173159200 Weak transcription Left Ventricle heart
24 chr1:173154200-173159200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015