Variant report

Variant	rs12120808
Chromosome Location	chr1:173241960-173241961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173241758..173244830-chr1:173248156..173250741,3	K562	blood:
2	chr1:173241553..173243568-chr1:173255390..173258226,2	K562	blood:
3	chr1:173241758..173244231-chr1:173248162..173250741,2	K562	blood:

Variant related genes	Relation type
ENSG00000251817	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10465507	0.82[ASN][1000 genomes]
rs10489266	0.82[ASN][1000 genomes]
rs10489268	0.82[ASN][1000 genomes]
rs10798264	0.82[ASN][1000 genomes]
rs10912558	0.82[ASN][1000 genomes]
rs10912561	0.82[ASN][1000 genomes]
rs11587348	0.82[ASN][1000 genomes]
rs11801818	0.82[ASN][1000 genomes]
rs11806687	0.82[ASN][1000 genomes]
rs11807031	0.82[ASN][1000 genomes]
rs11808060	0.82[ASN][1000 genomes]
rs12119090	0.91[ASN][1000 genomes]
rs12125395	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300347	0.82[ASN][1000 genomes]
rs17300677	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346501	0.82[ASN][1000 genomes]
rs17372309	0.82[ASN][1000 genomes]
rs4090392	0.82[ASN][1000 genomes]
rs4113832	0.82[ASN][1000 genomes]
rs4916210	0.82[ASN][1000 genomes]
rs4916314	0.82[ASN][1000 genomes]
rs56074681	0.82[ASN][1000 genomes]
rs57928823	0.82[ASN][1000 genomes]
rs61826345	0.82[ASN][1000 genomes]
rs61828261	0.82[ASN][1000 genomes]
rs61828267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722845	0.82[ASN][1000 genomes]
rs72722865	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173239400-173244200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:173239600-173243400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173239600-173244000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:173239800-173244200	Weak transcription	K562	blood
5	chr1:173240000-173244200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:173240200-173244000	Weak transcription	HMEC	breast
7	chr1:173241400-173242000	Enhancers	HSMM	muscle
8	chr1:173241800-173242200	Enhancers	Ovary	ovary

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