Variant report

Variant	rs17300754
Chromosome Location	chr1:173247628-173247629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:173246046-173250055	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000251817	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10465507	0.82[ASN][1000 genomes]
rs10489266	0.82[ASN][1000 genomes]
rs10489268	0.82[ASN][1000 genomes]
rs10798264	0.82[ASN][1000 genomes]
rs10912558	0.82[ASN][1000 genomes]
rs10912561	0.82[ASN][1000 genomes]
rs11587348	0.82[ASN][1000 genomes]
rs11801818	0.82[ASN][1000 genomes]
rs11806687	0.82[ASN][1000 genomes]
rs11807031	0.82[ASN][1000 genomes]
rs11808060	0.82[ASN][1000 genomes]
rs12119090	0.91[ASN][1000 genomes]
rs12120808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125395	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300347	0.82[ASN][1000 genomes]
rs17300677	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346501	0.82[ASN][1000 genomes]
rs17372309	0.82[ASN][1000 genomes]
rs4090392	0.82[ASN][1000 genomes]
rs4113832	0.82[ASN][1000 genomes]
rs4916210	0.82[ASN][1000 genomes]
rs4916314	0.82[ASN][1000 genomes]
rs56074681	0.82[ASN][1000 genomes]
rs57928823	0.82[ASN][1000 genomes]
rs61826345	0.82[ASN][1000 genomes]
rs61828261	0.82[ASN][1000 genomes]
rs61828267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722845	0.82[ASN][1000 genomes]
rs72722865	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173244800-173248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:173245000-173247800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:173245000-173247800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links