The 2.0 version of rSNPBase

Variant report

Variant rs17372309
Chromosome Location chr1:173154539-173154540
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173132200-173158800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:173143000-173159000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:173148600-173159200 Weak transcription Lung lung
4 chr1:173149000-173154800 Weak transcription Dnd41 blood
5 chr1:173150200-173159600 Weak transcription Primary T cells from cord blood blood
6 chr1:173150600-173157600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr1:173150600-173157800 Strong transcription HSMM muscle
8 chr1:173150800-173156200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:173151000-173156400 Weak transcription Fetal Muscle Leg muscle
10 chr1:173152000-173159400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:173152200-173158000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:173152400-173158400 Strong transcription HUVEC blood vessel
13 chr1:173152600-173155400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:173152600-173156800 Strong transcription Primary hematopoietic stem cells blood
15 chr1:173152800-173154600 Weak transcription Brain Substantia Nigra brain
16 chr1:173153600-173155200 Weak transcription Ovary ovary
17 chr1:173153600-173155200 Weak transcription HepG2 liver
18 chr1:173153600-173156400 Strong transcription HSMMtube muscle
19 chr1:173153600-173159400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr1:173153600-173159400 Weak transcription Brain Anterior Caudate brain
21 chr1:173153800-173159400 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:173154000-173159200 Weak transcription Left Ventricle heart
23 chr1:173154200-173159200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:173154400-173157200 Strong transcription Primary hematopoietic stem cells short term culture blood
25 chr1:173154400-173176200 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015