Variant report

Variant	rs10912560
Chromosome Location	chr1:173164457-173164458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10127727	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465507	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10489266	1.00[CHB][hapmap]
rs10489268	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10798264	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10912561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11808060	1.00[CHB][hapmap]
rs12144635	1.00[CHB][hapmap]
rs13343107	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845506	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17300347	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs17346501	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs17372309	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4916209	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55960552	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7555165	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173154800-173164600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:173160400-173164600	Weak transcription	Fetal Thymus	thymus
5	chr1:173160400-173164800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:173160400-173166600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:173160400-173174400	Weak transcription	Spleen	Spleen
8	chr1:173160600-173164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:173160600-173171800	Weak transcription	NHLF	lung
10	chr1:173160600-173176000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:173160800-173168000	Weak transcription	HepG2	liver
12	chr1:173160800-173171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:173161000-173164600	Weak transcription	Dnd41	blood
14	chr1:173161200-173164600	Weak transcription	Left Ventricle	heart
15	chr1:173161800-173164600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:173162000-173166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:173162200-173165200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:173162400-173164600	Enhancers	HUVEC	blood vessel
19	chr1:173162400-173164800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:173163200-173171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:173163400-173171800	Weak transcription	Osteobl	bone
22	chr1:173163600-173166000	Weak transcription	HSMMtube	muscle
23	chr1:173163800-173164800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:173164000-173164600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:173164000-173164800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:173164200-173166200	Genic enhancers	HSMM	muscle
27	chr1:173164400-173164800	Enhancers	GM12878-XiMat	blood
28	chr1:173164400-173165400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr1:173164400-173165400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:173164400-173165800	Enhancers	Primary B cells from peripheral blood	blood

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