Variant report

Variant	rs13343107
Chromosome Location	chr1:173168321-173168322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10127727	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465507	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10798264	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10912560	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912561	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13343108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845506	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916209	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55960552	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7555165	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:173160400-173174400	Weak transcription	Spleen	Spleen
4	chr1:173160600-173171800	Weak transcription	NHLF	lung
5	chr1:173160600-173176000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:173160800-173171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:173163200-173171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173163400-173171800	Weak transcription	Osteobl	bone
9	chr1:173165000-173168600	Strong transcription	Primary hematopoietic stem cells	blood
10	chr1:173165000-173173000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:173165200-173171200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:173165200-173171200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:173165200-173171800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:173165400-173173200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:173165800-173169800	Weak transcription	Primary B cells from cord blood	blood
16	chr1:173165800-173171200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr1:173166000-173169600	Strong transcription	HSMMtube	muscle
18	chr1:173166000-173171200	Weak transcription	GM12878-XiMat	blood
19	chr1:173166000-173172800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:173166400-173169400	Weak transcription	Dnd41	blood
21	chr1:173167000-173169600	Genic enhancers	HUVEC	blood vessel
22	chr1:173167200-173169600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:173167400-173169400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:173168000-173168400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:173168000-173168400	Strong transcription	HepG2	liver
26	chr1:173168200-173170600	Genic enhancers	HSMM	muscle

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