Variant report

Variant	rs16845506
Chromosome Location	chr1:173141800-173141801
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10127727	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10465507	0.83[EUR][1000 genomes]
rs10798264	0.82[EUR][1000 genomes]
rs10912560	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10912561	0.83[EUR][1000 genomes]
rs13343107	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13343108	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916209	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960552	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555165	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173132200-173158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173140600-173142400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:173140800-173143000	ZNF genes & repeats	HSMM	muscle
4	chr1:173140800-173143600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:173141000-173141800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:173141000-173141800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:173141000-173141800	ZNF genes & repeats	Dnd41	blood
8	chr1:173141200-173141800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:173141200-173141800	ZNF genes & repeats	Brain Angular Gyrus	brain
10	chr1:173141200-173142400	ZNF genes & repeats	HSMMtube	muscle
11	chr1:173141800-173142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:173141800-173142600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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