Variant report

Variant	rs10127727
Chromosome Location	chr1:173150964-173150965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10465507	0.84[EUR][1000 genomes]
rs10489266	1.00[CHB][hapmap]
rs10489268	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10798264	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs10912560	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912561	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs11808060	1.00[CHB][hapmap]
rs12144635	1.00[CHB][hapmap]
rs13343107	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343108	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845506	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17300347	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17346501	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs17372309	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs4090390	0.87[CEU][hapmap]
rs4090392	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs4916209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55960552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7555165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10127727	KLHL20	cis	parietal	SCAN
rs10127727	TNFSF18	cis	parietal	SCAN
rs10127727	TNFSF18	cis	cerebellum	SCAN
rs10127727	TNN	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173132200-173158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173143000-173159000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:173145400-173152400	Weak transcription	HUVEC	blood vessel
4	chr1:173148600-173152600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:173148600-173159200	Weak transcription	Lung	lung
6	chr1:173148800-173152200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:173149000-173154400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:173149000-173154800	Weak transcription	Dnd41	blood
9	chr1:173150200-173159600	Weak transcription	Primary T cells from cord blood	blood
10	chr1:173150600-173151000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:173150600-173157600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:173150600-173157800	Strong transcription	HSMM	muscle
13	chr1:173150800-173151000	ZNF genes & repeats	HSMMtube	muscle
14	chr1:173150800-173156200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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