The 2.0 version of rSNPBase

Variant report

Variant rs10912561
Chromosome Location chr1:173164565-173164566
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173154800-173164600 Weak transcription Primary B cells from cord blood blood
3 chr1:173158800-173170200 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:173160400-173164600 Weak transcription Fetal Thymus thymus
5 chr1:173160400-173164800 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:173160400-173166600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:173160400-173174400 Weak transcription Spleen Spleen
8 chr1:173160600-173164800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:173160600-173171800 Weak transcription NHLF lung
10 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:173160800-173168000 Weak transcription HepG2 liver
12 chr1:173160800-173171200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:173161000-173164600 Weak transcription Dnd41 blood
14 chr1:173161200-173164600 Weak transcription Left Ventricle heart
15 chr1:173161800-173164600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:173162000-173166400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:173162200-173165200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:173162400-173164600 Enhancers HUVEC blood vessel
19 chr1:173162400-173164800 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr1:173163200-173171800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:173163400-173171800 Weak transcription Osteobl bone
22 chr1:173163600-173166000 Weak transcription HSMMtube muscle
23 chr1:173163800-173164800 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr1:173164000-173164600 Weak transcription Primary hematopoietic stem cells blood
25 chr1:173164000-173164800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:173164200-173166200 Genic enhancers HSMM muscle
27 chr1:173164400-173164800 Enhancers GM12878-XiMat blood
28 chr1:173164400-173165400 Enhancers Primary T cells fromperipheralblood blood
29 chr1:173164400-173165400 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr1:173164400-173165800 Enhancers Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015