The 2.0 version of rSNPBase

Variant report

Variant rs45454293
Chromosome Location chr1:173177236-173177237
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173172000-173181200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:173172800-173179400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:173174400-173177600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr1:173174800-173179400 Enhancers HepG2 liver
5 chr1:173175200-173179400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:173175200-173179400 Weak transcription Left Ventricle heart
7 chr1:173175200-173180000 Weak transcription Right Ventricle heart
8 chr1:173175200-173193000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:173175600-173182600 Enhancers Stomach Mucosa stomach
10 chr1:173175800-173177600 Enhancers Fetal Intestine Small intestine
11 chr1:173175800-173186000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:173175800-173193000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:173176000-173177400 Flanking Active TSS Primary hematopoietic stem cells blood
14 chr1:173176400-173177600 Enhancers Dnd41 blood
15 chr1:173176400-173177800 Weak transcription Fetal Heart heart
16 chr1:173176400-173179400 Weak transcription Duodenum Mucosa Duodenum
17 chr1:173176400-173179400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:173176400-173179800 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:173176600-173177400 Weak transcription Fetal Thymus thymus
20 chr1:173176600-173177600 Enhancers NH-A brain
21 chr1:173176600-173177800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:173176600-173177800 Enhancers Muscle Satellite Cultured Cells --
23 chr1:173176600-173177800 Enhancers HSMMtube muscle
24 chr1:173176600-173178000 Enhancers Osteobl bone
25 chr1:173176600-173178800 Weak transcription Ovary ovary
26 chr1:173176600-173179200 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr1:173176600-173179400 Weak transcription Right Atrium heart
28 chr1:173176600-173180600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:173176800-173177600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:173176800-173178200 Weak transcription Fetal Intestine Large intestine
31 chr1:173176800-173178600 Enhancers HSMM muscle
32 chr1:173176800-173180800 Weak transcription Brain Substantia Nigra brain
33 chr1:173177000-173177600 Enhancers Pancreatic Islets Pancreatic Islet
34 chr1:173177000-173178600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr1:173177000-173179400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:173177000-173179800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:173177000-173181400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:173177000-173181600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:173177200-173177600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:173177200-173179600 Weak transcription HUVEC blood vessel
41 chr1:173177200-173180400 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015