Variant report

Variant	rs12343242
Chromosome Location	chr9:110708882-110708883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10512375	0.95[CEU][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs10512376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521087	1.00[YRI][hapmap]
rs10816591	0.95[YRI][hapmap]
rs10816592	0.91[YRI][hapmap]
rs10979114	0.94[EUR][1000 genomes]
rs10979119	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12340808	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12351443	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1339761	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs34116013	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34844672	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35258395	0.82[EUR][1000 genomes]
rs35960909	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59994319	0.88[EUR][1000 genomes]
rs6477606	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026539	0.86[YRI][hapmap]
rs7041168	0.81[AFR][1000 genomes]
rs7867441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110702200-110711000	Weak transcription	Fetal Intestine Large	intestine
2	chr9:110704000-110714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110707200-110709800	Enhancers	Stomach Mucosa	stomach
4	chr9:110707400-110712600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110707800-110709400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:110708000-110709200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:110708000-110709600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:110708000-110709800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:110708200-110709200	Weak transcription	Gastric	stomach
10	chr9:110708200-110709600	Weak transcription	Pancreas	Pancrea
11	chr9:110708600-110710200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:110708800-110709400	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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