Variant report

Variant	rs6477606
Chromosome Location	chr9:110702554-110702555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110250588..110253212-chr9:110699755..110702575,2	MCF-7	breast:
2	chr9:110693655..110697978-chr9:110698723..110702635,5	MCF-7	breast:
3	chr9:110701124..110702894-chr9:110705619..110707761,2	K562	blood:
4	chr9:110701534..110704025-chr9:110707903..110710423,2	MCF-7	breast:
5	chr9:110697341..110700302-chr9:110702105..110704543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10512375	0.86[ASW][hapmap];0.90[CEU][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs10512376	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10521087	0.92[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap]
rs10816590	1.00[CHB][hapmap]
rs10816591	1.00[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs10816592	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs10816593	0.80[AFR][1000 genomes]
rs10979114	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979119	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12340808	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12343242	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12351443	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339761	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34116013	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34844672	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35960909	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59994319	0.88[EUR][1000 genomes]
rs7026539	0.97[LWK][hapmap];0.84[YRI][hapmap]
rs7041168	0.91[AFR][1000 genomes]
rs7867441	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6477606	ABLIM1	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110695800-110705200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:110696200-110707800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110701200-110703800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:110701600-110705000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:110702200-110711000	Weak transcription	Fetal Intestine Large	intestine
6	chr9:110702400-110702600	Enhancers	Spleen	Spleen
7	chr9:110702400-110703800	Enhancers	Fetal Stomach	stomach

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