Variant report

Variant	rs1234361
Chromosome Location	chr7:150379464-150379465
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12154435	0.82[ASN][1000 genomes]
rs12154436	0.82[ASN][1000 genomes]
rs1234356	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1234357	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12532045	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1316352	0.82[ASN][1000 genomes]
rs13225905	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1403220	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34030180	0.81[ASN][1000 genomes]
rs34396063	0.82[ASN][1000 genomes]
rs34585329	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35285840	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35329030	0.82[ASN][1000 genomes]
rs36020504	0.82[ASN][1000 genomes]
rs36065681	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56138121	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56279394	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56412316	0.82[ASN][1000 genomes]
rs59468128	0.81[ASN][1000 genomes]
rs62490361	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62490366	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62491829	0.82[ASN][1000 genomes]
rs73474862	0.82[ASN][1000 genomes]
rs954395	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1234361	GIMAP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150373200-150380800	Weak transcription	Thymus	Thymus
2	chr7:150374000-150380400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:150374200-150380400	Weak transcription	GM12878-XiMat	blood
4	chr7:150375600-150382000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:150376200-150380600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr7:150376200-150380600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:150376200-150382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:150376400-150380600	Weak transcription	Fetal Thymus	thymus
9	chr7:150376400-150381200	Weak transcription	Spleen	Spleen
10	chr7:150376800-150380400	Weak transcription	Primary T cells from cord blood	blood
11	chr7:150376800-150380400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:150376800-150380400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:150376800-150380400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:150377000-150380200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:150377000-150380400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:150377000-150380400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:150377200-150380000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:150377200-150380400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:150377200-150380400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:150377600-150380400	Weak transcription	Dnd41	blood

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