Variant report
Variant | rs62491829 |
---|---|
Chromosome Location | chr7:150349768-150349769 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:150349688..150351928-chr7:150354342..150355867,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11764483 | 0.82[ASN][1000 genomes] |
rs11769703 | 0.82[ASN][1000 genomes] |
rs12154435 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12154436 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12154687 | 0.89[ASN][1000 genomes] |
rs1234356 | 0.83[ASN][1000 genomes] |
rs1234357 | 0.88[ASN][1000 genomes] |
rs1234361 | 0.82[ASN][1000 genomes] |
rs12397707 | 0.88[ASN][1000 genomes] |
rs12532045 | 0.96[ASN][1000 genomes] |
rs12535208 | 0.89[ASN][1000 genomes] |
rs12703091 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1316352 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13220967 | 0.89[ASN][1000 genomes] |
rs13223607 | 0.82[ASN][1000 genomes] |
rs13223653 | 0.82[ASN][1000 genomes] |
rs13225905 | 0.96[ASN][1000 genomes] |
rs13226190 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs13230583 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs13234724 | 0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs13238412 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs13240099 | 0.89[ASN][1000 genomes] |
rs13240106 | 0.89[ASN][1000 genomes] |
rs1403220 | 0.96[ASN][1000 genomes] |
rs1578916 | 0.82[ASN][1000 genomes] |
rs17542143 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs2204131 | 0.82[ASN][1000 genomes] |
rs34030180 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs34079857 | 0.82[ASN][1000 genomes] |
rs34097488 | 0.82[ASN][1000 genomes] |
rs34176120 | 0.82[ASN][1000 genomes] |
rs34396063 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34585329 | 0.96[ASN][1000 genomes] |
rs34940374 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs35114152 | 0.82[ASN][1000 genomes] |
rs35233281 | 0.82[ASN][1000 genomes] |
rs35276692 | 0.82[ASN][1000 genomes] |
rs35283918 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35285840 | 0.96[ASN][1000 genomes] |
rs35329030 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35342751 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs35659213 | 0.82[ASN][1000 genomes] |
rs35760614 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35873531 | 0.82[ASN][1000 genomes] |
rs36020504 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36065681 | 0.96[ASN][1000 genomes] |
rs36200127 | 0.81[ASN][1000 genomes] |
rs3735086 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs3807382 | 0.82[ASN][1000 genomes] |
rs4543461 | 0.82[ASN][1000 genomes] |
rs4573169 | 0.82[ASN][1000 genomes] |
rs55681398 | 0.83[ASN][1000 genomes] |
rs56138121 | 0.96[ASN][1000 genomes] |
rs56279394 | 0.96[ASN][1000 genomes] |
rs56325059 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs56412316 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57729315 | 0.82[ASN][1000 genomes] |
rs57899656 | 0.82[ASN][1000 genomes] |
rs59468128 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs62490361 | 0.96[ASN][1000 genomes] |
rs62490366 | 0.96[ASN][1000 genomes] |
rs62491810 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs62491812 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs62491814 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs62502277 | 0.82[ASN][1000 genomes] |
rs62502293 | 0.82[ASN][1000 genomes] |
rs62502294 | 0.82[ASN][1000 genomes] |
rs62503201 | 0.81[ASN][1000 genomes] |
rs6951360 | 0.82[ASN][1000 genomes] |
rs6978778 | 0.82[ASN][1000 genomes] |
rs71539836 | 0.81[ASN][1000 genomes] |
rs73474862 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs954395 | 0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034409 | chr7:149844639-150447071 | Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
2 | nsv608990 | chr7:149961274-150707488 | Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
3 | nsv1017368 | chr7:150016952-150655773 | Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
4 | nsv539195 | chr7:150016952-150655773 | Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
5 | esv2758617 | chr7:150251949-150463804 | Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
6 | esv2759573 | chr7:150251949-150463804 | Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | esv3388935 | chr7:150301204-150374532 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv1030109 | chr7:150312916-150701010 | Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
9 | nsv967475 | chr7:150323577-150610034 | Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
10 | nsv831187 | chr7:150325913-150503500 | Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:150346800-150350800 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
2 | chr7:150347000-150353400 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
3 | chr7:150347400-150354200 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |