Variant report

Variant	rs12343899
Chromosome Location	chr9:26832870-26832871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12336425	1.00[YRI][hapmap]
rs12343873	1.00[AFR][1000 genomes]
rs12345202	1.00[AFR][1000 genomes]
rs12351123	1.00[AFR][1000 genomes]
rs12351240	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12351389	1.00[YRI][hapmap]
rs12352727	1.00[AFR][1000 genomes]
rs73431813	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3373096	chr9:26825001-26848031	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26829000-26833400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:26829000-26839400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:26829000-26839600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:26829000-26840200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:26829000-26840400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:26829200-26842200	Weak transcription	Left Ventricle	heart
9	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:26830400-26833800	Weak transcription	HSMMtube	muscle
11	chr9:26832200-26866800	Weak transcription	Gastric	stomach
12	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:26832800-26833000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr9:26832800-26834200	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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